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Shopify vs WooCommerce in India: Real Costs and GST for Your Own Store

✓ 7 official and published sources✓ Written for Indian sellers and small businesses

Shopify suits you if you want a store running this week and are happy to pay a monthly plan plus a fee on each online payment. WooCommerce suits you if you are comfortable with WordPress, hosting and plugins, and want lower running costs as sales grow. For GST, both make you a direct seller: you invoice, register and report yourself.

Key points
  • Shopify Basic costs Rs 1,499 a month paid yearly or Rs 1,994 paid monthly, as on 12 Nov 2026, per Shopify's India pricing page.
  • Shopify Payments is not offered in India, so you use a third-party gateway, and Shopify adds its own transaction fee: 2% on Basic, 1% on Grow, as on 12 Nov 2026.
  • WooCommerce is free to download and use, but you pay for hosting, paid extensions and a gateway.
  • An own store is not a marketplace sale. Selling goods to buyers in other states needs GST registration whatever your turnover.
In this guide
  1. Why open your own store at all?
  2. Shopify and WooCommerce side by side
  3. A worked example
  4. What changes for GST when you sell on your own store?
  5. How to choose, step by step
  6. The mistake people usually make

Why open your own store at all?

Marketplaces bring buyers, but they also set the rules: fees, return windows, which payment modes you offer, even whether your account stays open. An own store gives you the customer's details, your own brand and your own return policy. The price is that you must bring the traffic yourself, usually through social media, ads or repeat buyers.

Most small sellers do both. The marketplace pays the bills, and the own store builds something you control. So the real question is which platform costs less effort and money for the size you are now.

Shopify and WooCommerce side by side

ShopifyWooCommerce
What it isA hosted store builder. Shopify runs the serversA free plugin for WordPress. You run the website
Plan cost (as on 12 Nov 2026)Basic Rs 1,499 a month yearly or Rs 1,994 monthly; Grow Rs 5,599 yearly or Rs 7,447 monthly; Advanced Rs 22,680 yearly or Rs 30,164 monthlyFree to download and use
Other running costsPaid apps and themes if you need themHosting, domain, paid extensions and themes. WooCommerce's own estimate is USD 25 to 350 a month for hosting and USD 29 to 299 a year per extension
Payment feesGateway's fee, plus Shopify's third-party transaction fee of 2% (Basic), 1% (Grow), 0.6% (Advanced)Gateway's fee only. WooCommerce's own WooPayments is not offered to Indian merchants
Skill neededLow. Most setup is point and clickMedium. Updates, backups and security are your job
ControlWithin Shopify's rules and appsFull, including the code and data

Shopify's pricing page does not say whether GST is added to these plan prices, and its current offer of a short trial and a low first few months may change. Read the page and your first invoice before you decide. Gateway fees vary by provider and payment mode, so we have not printed any.

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A worked example

Sneha sells handmade jewellery from Kolkata. She expects online prepaid sales of Rs 3,00,000 a month on her own store, through an Indian payment gateway. Gateway fees are the same on both platforms, so they are left out. WooCommerce costs are an illustration.

Monthly costShopify BasicShopify GrowWooCommerce
Plan, paid yearlyRs 1,499Rs 5,599Nil
Shopify transaction fee on Rs 3,00,000Rs 6,000 (2%)Rs 3,000 (1%)Nil
Hosting and extensions (illustration)NilNilRs 3,000
TotalRs 7,499Rs 8,599Rs 3,000

At Rs 6,00,000 a month the picture shifts. Basic becomes Rs 13,499 and Grow Rs 11,599, while WooCommerce stays near Rs 3,000. Grow costs Rs 4,100 more in plan fee and saves 1% on sales, so it overtakes Basic at about Rs 4,10,000 of monthly sales.

So is WooCommerce always cheaper? On paper, yes. But the illustration leaves out your time, and a developer's bill when a plugin update breaks checkout during a sale. If you have no one to look after the site, the Shopify fee buys you peace of mind.

What changes for GST when you sell on your own store?

On a marketplace, the operator collects the buyer's money, holds back TCS and reports your sales in its GSTR-8. On your own store none of that happens. Shopify and WooCommerce give you the software, and the buyer pays you through your gateway. So you should not expect GST TCS or 194-O TDS on these sales, and you are fully responsible for the tax.

  • Registration. Section 24 makes registration compulsory for anyone making an inter-State taxable supply. If you ship goods to buyers in other states from your own site, you need a GSTIN from the start, whatever your turnover. The small-seller route that lets some marketplace sellers sell without a GSTIN does not cover your own website. More in GST registration limit.
  • Invoices. You issue the tax invoice yourself, with your GSTIN, HSN and the right rate. Both platforms can do this through settings or apps.
  • GSTR-1. Own-store consumer sales are reported by state and rate in your B2C figures. They are not sales through an e-commerce operator, so they do not belong in the marketplace tables. If you sell on marketplaces too, read GSTR-1 for multiple marketplaces.
  • Fees. Keep the invoices for plan fees, apps and gateway charges. Where GST is charged to your GSTIN, it may be claimable as input tax credit. A foreign platform's invoice without Indian GST raises a reverse charge question worth asking your CA.

How to choose, step by step

  1. Estimate your online sales for the next year, and how much will be prepaid.
  2. Price both options from the official pricing pages on the day you decide, using the table above as the template.
  3. Be honest about skills. Who will update plugins, take backups and fix a broken checkout?
  4. Get your GSTIN ready before your first sale to another state.
  5. Set up tax invoices with your HSN codes and rates before launch, not after the first hundred orders.

The mistake people usually make

The usual mistake is treating the own store like a marketplace account for tax. Sellers wait for a TCS credit that never comes, or assume someone else is reporting the sales. On your own store, if you do not put the sale in your GSTR-1, no one does, until a notice asks why your bank credits are higher than your declared sales.

The second mistake is comparing plan prices and forgetting the transaction fee. On Rs 3,00,000 of monthly sales, Shopify Basic's 2% is four times the plan price itself.

How AprilTax can help

Many sellers run an own store alongside Amazon, Flipkart or Meesho. For the marketplace side, AprilTax has a free GSTR-1 tool for online sellers: upload the sales reports, and it prepares your GSTR-1, runs about 30 checks and matches the TCS your marketplaces reported. You upload the JSON file on the GST portal yourself.

Frequently asked questions

Is Shopify or WooCommerce cheaper in India?
WooCommerce is usually cheaper to run because the plugin is free and there is no platform transaction fee, but you pay for hosting, extensions and upkeep. Shopify Basic costs Rs 1,499 a month paid yearly, as on 12 Nov 2026, plus a 2% transaction fee when you use a third-party gateway, which Indian stores must.
Is Shopify Payments available in India?
No. India is not on Shopify's list of countries where Shopify Payments is available, as on 12 Nov 2026. Indian stores use a third-party payment provider, and Shopify charges its third-party transaction fee on those payments according to the plan.
Is WooCommerce really free?
The WooCommerce plugin is free to download and use. You still pay for web hosting, a domain, any paid extensions or themes, and your payment gateway's fees. WooCommerce's own payments service, WooPayments, is not offered to merchants based in India.
Do I need GST registration to sell on my own Shopify or WooCommerce store?
If you ship goods to buyers in other states, yes, from the first sale. Section 24 of the CGST Act makes registration compulsory for inter-State taxable supplies whatever the turnover. If you sell only within your own state, the normal turnover limit applies.
Will TCS be deducted on my own website sales?
You should not expect it. GST TCS is collected by an e-commerce operator that collects the buyer's payment on your behalf, such as a marketplace. On your own store the buyer pays you through your gateway. Confirm your setup with a CA if a third party collects payments for you.
How do I report own-store sales in GSTR-1?
Report sales to consumers by state and rate in your B2C figures, and sales to registered buyers invoice by invoice. Do not put them in the tables meant for sales through an e-commerce operator. If you also sell on marketplaces, report each channel correctly in the same GSTR-1.
Can I claim GST on Shopify or gateway fees?
Where the fee invoice is issued to your GSTIN with Indian GST, it may be claimable as input tax credit if you are a regular GST seller. If a foreign platform bills you without Indian GST, ask your CA whether reverse charge applies.

File your GSTR-1 free

AprilTax turns your Amazon, Flipkart and Meesho reports into a GSTR-1 file ready for the GST portal, with the checks done for you.

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Avaneesh Kumar

Founder of AprilTax, building simple tax tools for online sellers.

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